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Publications

If you are unable to access any of our publications, please e-mail us for a copy!​

UChicago

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2024

  • Fuente Castro CDL, Cortés C, Raghavan M, Castillo D, Castro M, Verdugo RA, Moraga M. The genomic and cultural diversity of the Inka Qhapaq hucha ceremony in Chile and Argentina. Genome Biology and Evolution. doi: https://doi.org/10.1093/gbe/evae196

  • Biddanda A*, Bandyopadhyay E*, Fuente Castro CDL*, Witonsky D, Pasupuleti N, Fonseca R, Freilich S, Moots HM, Stanisavic J, Willis T, Menon A, Mustak MS, Kodira CD, Naren AP, Sikdar M, Rai N#, Raghavan M#. Distinct positions of genetic and oral histories: Perspectives from India. Human Genetics and Genomics Advances. 2024 May 8;5(3):100305. doi: 10.1016/j.xhgg.2024.100305 (* equal contributions; # co-corresponding authors)

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2023

  • Ávila-Arcos MC, Raghavan M, Schlebusch C. Going local with ancient DNA: A review of human histories from regional perspectives. Science. 2023 Oct 6;382(6666):53-58. doi: 10.1126/science.adh8140

 

2022

  • Ávila-Arcos MC*, Castro CDLF*, Nieves-Colón MA*, Raghavan M*. Recommendations for sustainable ancient DNA research in the Global South: voices from a new generation of paleogenomicists. Frontiers in Genetics. doi: https://doi.org/10.3389/fgene.2022.880170 (* equal contributions)

  • Silva CP, Castro CDLF, Zarzar TG, Raghavan M, Tonko-Huenucoy A, Martínez FI, Montalva N. The articulation of genomics, mestizaje, and Indigenous identities in Chile: A case study of the social implications of genomic research in light of current research practices. Frontiers in Genetics. doi: https://doi.org/10.3389/fgene.2022.817318

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Pre-UChicago

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2019

  • Raghavan M, Schroeder H, Malaspinas AS. An Ancient Genome from the Indus Valley Civilization. Cell.  2019 Oct;179(3):586-588. doi: 10.1016/j.cell.2019.09.027.

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2016

  • Seersholm F, Pedersen M, Søe M, Shokry H, Mak S, Ruter A, Raghavan M, Fitzhugh W, Kjaer K, Willerslev E, Meldgaard M, Kapel C, Hansen AJ. DNA evidence of bowhead whale exploitation by Greenlandic Paleo-Inuit 4000 years ago. Nat Commun. 2016 Nov 8;7:13389. doi: 10.1038/ncomms13389.

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2015​​

  • Raghavan M*, Steinrücken M*, Harris K*, Schiffels S*, Rasmussen S*, DeGiorgio M*, Albrechtsen A*, Valdiosera C*, Ávila-Arcos MC*, Malaspinas AS*, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, Damgaard Pde B, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CP, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E. Genomic evidence for the Pleistocene and recent population history of Native Americans. Science. 2015 Aug 21;349(6250):aab3884. doi: 10.1126/science.aab3884.

  • ​Der Sarkissian C, Allentoft ME, Avila-Arcos MC, Barnett R, Campos PF, Cappellini E, Ermini L, Fernández R, da Fonseca R, Ginolhac A, Hansen AJ, Jónsson H, Korneliussen T, Margaryan A, Martin MD, Moreno-Mayar JV, Raghavan M, Rasmussen M, Velasco MS, Schroeder H, Schubert M, Seguin-Orlando A, Wales N, Gilbert MT, Willerslev E, Orlando L. Ancient Genomics. Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130387. doi: 10.1098/rstb.2013.0387. Review.

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2014

  • Schubert M, Jónsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M, Raghavan M, Seguin-Orlando A, Korneliussen TS, Velazquez AM, Stenderup J, Hoover CA, Rubin CJ, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, MacHugh DE, Kalbfleisch T, MacLeod JN, Rubin EM, Sicheritz-Ponten T, Andersson L, Hofreiter M, Marques-Bonet T, Gilbert MT, Nielsen R, Excoffier L, Willerslev E, Shapiro B, Orlando L. Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):E5661-9. doi: 10.1073/pnas.1416991111.

  • ​Malaspinas AS, Lao O*, Schroeder H*, Rasmussen M*, Raghavan M*, Moltke I*, Campos PF*, Sagredo FS*, Rasmussen S*, Gonçalves VF*, Albrechtsen A, Allentoft ME, Johnson PL, Li M, Reis S, Bernardo DV, DeGiorgio M, Duggan AT, Bastos M, Wang Y, Stenderup J, Moreno-Mayar JV, Brunak S, Sicheritz-Ponten T, Hodges E, Hannon GJ, Orlando L, Price TD, Jensen JD, Nielsen R, Heinemeier J, Olsen J, Rodrigues-Carvalho C, Lahr MM, Neves WA, Kayser M, Higham T, Stoneking M, Pena SD, Willerslev E. Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Curr Biol. 2014 Nov 3;24(21):R1035-7. doi: 10.1016/j.cub.2014.09.078. (* equal contribution)

  • ​Clemente FJ, Cardona A, Inchley CE, Peter BM, Jacobs G, Pagani L, Lawson DJ, Antão T, Vicente M, Mitt M, DeGiorgio M, Faltyskova Z, Xue Y, Ayub Q, Szpak M, Mägi R, Eriksson A, Manica A, Raghavan M, Rasmussen M, Rasmussen S, Willerslev E, Vidal-Puig A, Tyler-Smith C, Villems R, Nielsen R, Metspalu M, Malyarchuk B, Derenko M, Kivisild T. A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. Am J Hum Genet. 2014 Nov 6;95(5):584-589. doi: 10.1016/j.ajhg.2014.09.016.

  • ​Juras A, Dabert M, Kushniarevich A, Malmström H, Raghavan M, Kosicki JZ, Metspalu E, Willerslev E, Piontek J. Ancient DNA Reveals Matrilineal Continuity in Present-Day Poland over the Last Two Millennia. PLoS One. 2014 Oct 22;9(10):e110839. doi: 10.1371/journal.pone.0110839. eCollection 2014.

  • ​Raghavan M, DeGiorgio M, Albrechtsen A, Moltke I, Skoglund P, Korneliussen TS, Grønnow B, Appelt M, Gulløv HC, Friesen TM, Fitzhugh W, Malmström H, Rasmussen S, Olsen J, Melchior L, Fuller BT, Fahrni SM, Stafford T Jr, Grimes V, Renouf MAP, Cybulski J, Lynnerup N, Lahr MM, Britton K, Knecht R, Arneborg J, Metspalu M, Cornejo OE, Malaspinas A-S, Wang Y, Rasmussen M, Raghavan V, Hansen TVO, Khusnutdinova E, Pierre T, Dneprovsky K, Andreasen C, Lange H, Hayes MG, Coltrain J, Spitsyn VA, Götherström, Orlando L, Kivisild T, Villems R, Crawford MH, Nielsen FC, Dissing J, Heinemeier J, Meldgaard M, Bustamante C, O’Rourke DH, Jakobsson M, Gilbert MTP, Nielsen R, Willerslev E. The genetic prehistory of the New World Arctic. Science. 2014 Aug 29;345(6200):1255832. doi: 10.1126/science.1255832.

  • ​Raghavan M, Espregueira Themudo G, Smith CI, Zazula G, Campos PF. Musk ox (Ovibos moschatus) of the mammoth steppe: tracing palaeodietary and palaeoenvironmental changes over the last 50,000 years using carbon and nitrogen isotopic analysis. 2014. Quaternary Science Reviews 102: 192-201

  • ​Fabre PH, Vilstrup JT, Raghavan M, Sarkissian CD, Willerslev E, Douzery EJ, Orlando L. Rodents of the Caribbean: origin and diversification of hutias unraveled by next-generation museomics. Biol Lett. 2014 Jul;10(7). doi: 10.1098/rsbl.2014.0266.

  • ​Skoglund P, Malmström H, Omrak A, Raghavan M, Valdiosera C, Günther T, Hall P, Tambets K, Parik J, Sjögren KG, Apel J, Willerslev E, Storå J, Götherström A, Jakobsson M. Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers. Science. 2014 May 16;344(6185):747-50. doi: 10.1126/science.1253448.

  • ​Raghavan M*, Skoglund P*, Graf KE, Metspalu M, Albrechtsen A, Moltke I, Rasmussen S, Stafford TW Jr, Orlando L, Metspalu E, Karmin M, Tambets K, Rootsi S, Mägi R, Campos PF, Balanovska E, Balanovsky O, Khusnutdinova E, Litvinov S, Osipova LP, Fedorova SA, Voevoda MI, DeGiorgio M, Sicheritz-Ponten T, Brunak S, Demeshchenko S, Kivisild T, Villems R, Nielsen R, Jakobsson M, Willerslev E. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature. 2014 Jan 2;505(7481):87-91. doi: 10.1038/nature12736

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2013

  • Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E. Recalibrating Eqqus evolution using the genome sequence of an early Middle Pleistocene horse. Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323.

  • ​Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, Nielsen SC, Weinstock J, Froese D, Vasiliev SK, Ovodov ND, Clary J, Helgen KM, Fleischer RC, Cooper A, Shapiro B, Orlando L. Mitochondrial phylogenomics of modern and ancient equids. PLoS One. 2013;8(2):e55950. doi: 10.1371/journal.pone.0055950.

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2012

  • Jenkins DL, Davis LG, Stafford TW Jr, Campos PF, Hockett B, Jones GT, Cummings LS, Yost C, Connolly TJ, Yohe RM 2nd, Gibbons SC, Raghavan M, Rasmussen M, Paijmans JL, Hofreiter M, Kemp BM, Barta JL, Monroe C, Gilbert MT, Willerslev E. Clovis age Western Stemmed projectile points and human coprolites at the Paisley Caves. Science. 2012 Jul 13;337(6091):223-8. doi: 10.1126/science.1218443.

  • ​Skoglund P, Malmström H, Raghavan M, Storå J, Hall P, Willerslev E, Gilbert MT, Götherström A, Jakobsson M. Origins and Genetic legacy of Neolithic farmers and hunter-gatherers in Europe. Science. 2012 Apr 27;336(6080):466-9. doi: 10.1126/science.1216304.

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2011

  • Orlando L, Ginolhac A, Raghavan M, Vilstrup J, Rasmussen M, Magnussen K, Steinmann KE, Kapranov P, Thompson JF, Zazula G, Froese D, Moltke I, Shapiro B, Hofreiter M, Al-Rasheid KA, Gilbert MT, Willerslev E. True single-molecule DNA sequencing of a Pleistocene horse bone. Genome Res. 2011 Oct;21(10):1705-19. doi: 10.1101/gr.122747.111.

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2010

  • Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, Kivisild T, Gupta R, Bertalan M, Nielsen K, Gilbert MT, Wang Y, Raghavan M, Campos PF, Kamp HM, Wilson AS, Gledhill A, Tridico S, Bunce M, Lorenzen ED, Binladen J, Guo X, Zhao J, Zhang X, Zhang H, Li Z, Chen M, Orlando L, Kristiansen K, Bak M, Tommerup N, Bendixen C, Pierre TL, Grønnow B, Meldgaard M, Andreasen C, Fedorova SA, Osipova LP, Higham TF, Ramsey CB, Hansen TV, Nielsen FC, Crawford MH, Brunak S, Sicheritz-Pontén T, Villems R, Nielsen R, Krogh A, Wang J, Willerslev E. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature. 2010 Feb 11;463(7282):757-62. doi: 10.1038/nature08835.

  • ​Raghavan M, McCullagh JS, Lynnerup N, Hedges RE. Amino acid delta 13C analysis of hair proteins and bone collagen using liquid chromatography/isotope ratio mass spectrometry: paleodietary implications from intra-individual comparisons. Rapid Commun Mass Spectrom. 2010 Mar 15;24(5):541-8. doi: 10.1002/rcm.4398.

  • ​Papageorgopoulou C, Rentsch K, Raghavan M, Hofmann MI, Colacicco G, Gallien V, Bianucci R, Rühli F. Preservation of cell structures in a medieval infant brain: a paleohistological, paleogenetic, radiological and physico-chemical study. Neuroimage. 2010 Apr 15;50(3):893-901. doi: 10.1016/j.neuroimage.2010.01.029

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